Variant report

Variant	rs4902626
Chromosome Location	chr14:69118241-69118242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69116897..69119206-chr14:69123496..69125960,2	MCF-7	breast:
2	chr14:69113122..69115915-chr14:69116555..69118938,2	K562	blood:
3	chr14:69117709..69119470-chr14:69122795..69124704,2	K562	blood:
4	chr14:69115935..69118979-chr14:69121407..69123459,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10135342	0.87[EUR][1000 genomes]
rs10873215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158754	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158756	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11629204	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436964	0.88[JPT][hapmap]
rs12893578	0.88[JPT][hapmap]
rs1474960	0.94[CEU][hapmap]
rs17756585	1.00[JPT][hapmap]
rs17756627	0.86[JPT][hapmap]
rs2180611	0.88[JPT][hapmap]
rs2273485	1.00[JPT][hapmap]
rs2877496	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs4643253	0.88[JPT][hapmap]
rs4899249	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4899250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902619	0.86[JPT][hapmap]
rs4902620	1.00[JPT][hapmap]
rs4902621	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs55767067	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61987113	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61987118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68065132	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7140554	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7152224	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7152382	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7152522	0.90[ASN][1000 genomes]
rs7153037	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7154244	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8006890	0.82[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:69106400-69118400	Weak transcription	Spleen	Spleen
3	chr14:69108800-69119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:69112000-69121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:69113200-69121600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:69113800-69118600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:69114000-69121200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:69115200-69119600	Enhancers	Placenta	Placenta
10	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
11	chr14:69115400-69119800	Enhancers	Fetal Lung	lung
12	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
13	chr14:69115600-69118400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr14:69115600-69118400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:69115600-69119600	Enhancers	NHLF	lung
16	chr14:69115800-69120800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:69115800-69121600	Weak transcription	Small Intestine	intestine
18	chr14:69116000-69119600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:69116000-69120800	Weak transcription	Fetal Thymus	thymus
20	chr14:69116000-69123600	Enhancers	Ovary	ovary
21	chr14:69116200-69118400	Weak transcription	Psoas Muscle	Psoas
22	chr14:69116200-69119600	Enhancers	NHDF-Ad	bronchial
23	chr14:69116600-69118600	Enhancers	Liver	Liver
24	chr14:69116600-69121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:69116800-69119600	Enhancers	K562	blood
26	chr14:69116800-69119800	Enhancers	Fetal Heart	heart
27	chr14:69117000-69118400	Enhancers	Primary T cells from cord blood	blood
28	chr14:69117000-69118600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr14:69117000-69119400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr14:69117000-69119600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
32	chr14:69117200-69118400	Enhancers	Fetal Intestine Small	intestine
33	chr14:69117200-69118400	Weak transcription	Right Atrium	heart
34	chr14:69117200-69119600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:69117200-69119800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:69117200-69119800	Enhancers	Fetal Muscle Leg	muscle
37	chr14:69117200-69120800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:69117400-69119000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:69117400-69119000	Enhancers	A549	lung
40	chr14:69117600-69118400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:69117600-69119400	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr14:69117600-69119400	Enhancers	Fetal Intestine Large	intestine
43	chr14:69117600-69121200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr14:69117800-69119400	Enhancers	Fetal Muscle Trunk	muscle
45	chr14:69117800-69119400	Enhancers	Right Ventricle	heart
46	chr14:69117800-69122400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr14:69118000-69118800	Enhancers	Gastric	stomach
48	chr14:69118000-69119000	Enhancers	Aorta	Aorta
49	chr14:69118000-69119000	Enhancers	HSMMtube	muscle
50	chr14:69118000-69119400	Enhancers	Left Ventricle	heart

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