Variant report

Variant	rs17756627
Chromosome Location	chr14:69090437-69090438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69074322..69077383-chr14:69088480..69091108,3	MCF-7	breast:
2	chr14:69089901..69091481-chr14:69094404..69096026,2	MCF-7	breast:
3	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10873215	0.82[CHD][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158754	0.81[ASN][1000 genomes]
rs11158755	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11158756	0.81[ASN][1000 genomes]
rs11629204	0.81[ASN][1000 genomes]
rs17106005	0.81[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17106008	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17106011	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17106012	0.81[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17756585	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17834971	0.81[CHD][hapmap]
rs2273485	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899249	0.86[ASW][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4899250	0.86[JPT][hapmap]
rs4902615	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902620	0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902621	0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55990521	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61987113	0.81[ASN][1000 genomes]
rs68065132	0.84[ASN][1000 genomes]
rs7140554	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs7152224	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7152382	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7152522	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7153037	0.86[ASW][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7153168	0.86[CHB][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7154244	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72729553	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72729557	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69085800-69091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69086200-69091400	Enhancers	Fetal Muscle Leg	muscle
4	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:69087000-69098400	Weak transcription	NHLF	lung
6	chr14:69087200-69091400	Enhancers	Fetal Stomach	stomach
7	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
9	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
10	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:69087600-69090800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:69087800-69092800	Weak transcription	HepG2	liver
13	chr14:69088000-69092800	Weak transcription	K562	blood
14	chr14:69088200-69090600	Enhancers	Primary T cells from cord blood	blood
15	chr14:69088200-69092000	Enhancers	Fetal Thymus	thymus
16	chr14:69088400-69092000	Weak transcription	Brain Substantia Nigra	brain
17	chr14:69088400-69093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:69088400-69093800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:69088600-69092600	Weak transcription	Fetal Heart	heart
20	chr14:69088600-69093000	Weak transcription	Fetal Lung	lung
21	chr14:69088800-69090600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:69088800-69092600	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:69088800-69093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:69088800-69093000	Weak transcription	Brain Anterior Caudate	brain
25	chr14:69088800-69093000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:69088800-69093000	Weak transcription	Psoas Muscle	Psoas
27	chr14:69088800-69093200	Weak transcription	Aorta	Aorta
28	chr14:69088800-69093200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr14:69088800-69093800	Weak transcription	Fetal Intestine Small	intestine
30	chr14:69088800-69093800	Weak transcription	Stomach Mucosa	stomach
31	chr14:69088800-69094000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr14:69089000-69091000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:69089000-69091200	Weak transcription	Adipose Nuclei	Adipose
34	chr14:69089000-69091800	Weak transcription	Pancreas	Pancrea
35	chr14:69089000-69092400	Weak transcription	Left Ventricle	heart
36	chr14:69089000-69092400	Weak transcription	Right Atrium	heart
37	chr14:69089000-69092800	Weak transcription	Brain Angular Gyrus	brain
38	chr14:69089000-69093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr14:69089000-69093000	Weak transcription	Ovary	ovary
40	chr14:69089000-69094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:69089000-69094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:69089000-69094000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:69089000-69094000	Weak transcription	Fetal Intestine Large	intestine
44	chr14:69089200-69092800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr14:69089200-69092800	Weak transcription	NHDF-Ad	bronchial
46	chr14:69089400-69090800	Enhancers	GM12878-XiMat	blood
47	chr14:69089400-69094200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:69090000-69094800	Enhancers	Placenta	Placenta
49	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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