Variant report

Variant	rs7140554
Chromosome Location	chr14:69105341-69105342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69099148..69101967-chr14:69103316..69106070,4	MCF-7	breast:
2	chr14:69104267..69107230-chr14:69123816..69125821,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10873215	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158754	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158755	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158756	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11629204	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436964	0.88[JPT][hapmap]
rs12893578	0.88[JPT][hapmap]
rs1474960	0.83[CEU][hapmap]
rs17756585	1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs17756627	0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs2180611	0.88[JPT][hapmap]
rs2273485	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs4643253	0.88[JPT][hapmap]
rs4899249	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4899250	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902619	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs4902620	1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[ASN][1000 genomes]
rs4902621	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4902626	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55767067	0.83[ASN][1000 genomes]
rs61987113	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61987118	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68065132	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7152224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152382	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152522	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7153037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7154244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72729557	0.80[ASN][1000 genomes]

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69095600-69107400	Enhancers	Fetal Stomach	stomach
3	chr14:69095800-69107800	Weak transcription	Fetal Brain Female	brain
4	chr14:69096400-69105400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:69096400-69105400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:69100800-69105400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:69100800-69105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:69100800-69107000	Weak transcription	Small Intestine	intestine
9	chr14:69100800-69107800	Weak transcription	Primary B cells from cord blood	blood
10	chr14:69101200-69105400	Weak transcription	Colonic Mucosa	Colon
11	chr14:69101200-69106400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:69101200-69106400	Enhancers	Brain Anterior Caudate	brain
13	chr14:69102200-69106200	Enhancers	Brain Substantia Nigra	brain
14	chr14:69102600-69106400	Enhancers	Brain Hippocampus Middle	brain
15	chr14:69102600-69106600	Enhancers	Colon Smooth Muscle	Colon
16	chr14:69102800-69106200	Enhancers	Fetal Intestine Small	intestine
17	chr14:69102800-69106400	Enhancers	Fetal Kidney	kidney
18	chr14:69102800-69106400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr14:69102800-69106600	Enhancers	Fetal Thymus	thymus
20	chr14:69103000-69106400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr14:69103200-69106200	Enhancers	Brain Angular Gyrus	brain
22	chr14:69103400-69106000	Enhancers	Fetal Intestine Large	intestine
23	chr14:69103400-69106200	Enhancers	Primary T cells from cord blood	blood
24	chr14:69103400-69106200	Enhancers	Brain Cingulate Gyrus	brain
25	chr14:69103400-69106200	Enhancers	Lung	lung
26	chr14:69103400-69106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:69103400-69106400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:69103400-69106600	Enhancers	Placenta	Placenta
29	chr14:69103400-69106800	Enhancers	Fetal Muscle Trunk	muscle
30	chr14:69103600-69105600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:69103600-69106400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:69103600-69106400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:69103800-69105600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr14:69103800-69106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:69103800-69106400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr14:69103800-69106400	Enhancers	Right Atrium	heart
37	chr14:69104000-69105800	Enhancers	NHLF	lung
38	chr14:69104000-69106000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr14:69104000-69106000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr14:69104000-69106000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr14:69104000-69106000	Enhancers	Liver	Liver
42	chr14:69104000-69106200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr14:69104000-69106200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr14:69104000-69106200	Enhancers	A549	lung
45	chr14:69104000-69106400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:69104000-69106400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr14:69104000-69106400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr14:69104000-69106400	Enhancers	Adipose Nuclei	Adipose
49	chr14:69104000-69106400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr14:69104000-69106400	Enhancers	Monocytes-CD14+_RO01746	blood

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