Variant report

Variant	rs72729557
Chromosome Location	chr14:69084431-69084432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69082901..69084800-chr14:69092925..69095612,3	MCF-7	breast:
2	chr14:69083407..69085925-chr14:69094233..69096029,2	MCF-7	breast:
3	chr14:69083698..69085820-chr14:69090807..69092819,2	MCF-7	breast:
4	chr14:69072937..69074516-chr14:69083531..69085230,2	MCF-7	breast:
5	chr14:69076773..69079330-chr14:69081666..69084664,2	K562	blood:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10873215	0.80[ASN][1000 genomes]
rs11158754	0.80[ASN][1000 genomes]
rs11158755	0.80[ASN][1000 genomes]
rs11158756	0.80[ASN][1000 genomes]
rs11629204	0.80[ASN][1000 genomes]
rs17106005	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17106008	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17106011	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17106012	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17756585	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17756627	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17834971	0.82[ASN][1000 genomes]
rs2273485	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4899249	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4902615	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902619	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902620	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4902621	0.84[ASN][1000 genomes]
rs55990521	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56104115	0.82[ASN][1000 genomes]
rs61987113	0.80[ASN][1000 genomes]
rs68065132	0.82[ASN][1000 genomes]
rs7140554	0.80[ASN][1000 genomes]
rs7152224	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7152382	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7152522	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7153037	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7153168	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7153395	0.81[ASN][1000 genomes]
rs7154244	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72729553	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69079200-69085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69080400-69084600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:69081800-69084800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:69082400-69085800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:69083200-69084800	ZNF genes & repeats	Colon Smooth Muscle	Colon
6	chr14:69083200-69085400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr14:69083800-69086200	Weak transcription	Fetal Heart	heart
8	chr14:69084000-69085800	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr14:69084400-69085800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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