Variant report

Variant	rs7153168
Chromosome Location	chr14:69078998-69078999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69076773..69079330-chr14:69081666..69084664,2	K562	blood:
2	chr14:69078810..69080489-chr14:69081085..69082611,2	MCF-7	breast:
3	chr14:68863006..68865932-chr14:69077018..69079780,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17106005	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106008	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106011	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106012	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17756585	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17756627	0.86[CHB][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17834971	0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2273485	0.84[CHB][hapmap]
rs4902613	0.83[GIH][hapmap]
rs4902615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902619	0.85[CHB][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55990521	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56104115	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7153395	0.93[ASN][1000 genomes]
rs72729553	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72729557	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795754	chr14:69017623-69079110	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv1832715	chr14:69017623-69079110	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69069600-69080000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69072400-69079400	Enhancers	Fetal Intestine Large	intestine
3	chr14:69072400-69079800	Enhancers	Fetal Stomach	stomach
4	chr14:69072600-69079400	Enhancers	Placenta	Placenta
5	chr14:69072800-69079200	Enhancers	Fetal Thymus	thymus
6	chr14:69072800-69079400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr14:69073400-69079800	Enhancers	Stomach Mucosa	stomach
8	chr14:69075200-69081200	Weak transcription	Fetal Brain Male	brain
9	chr14:69075600-69080600	Weak transcription	Thymus	Thymus
10	chr14:69075800-69079000	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:69076000-69080600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:69076200-69079400	Enhancers	Pancreas	Pancrea
13	chr14:69076800-69079800	Enhancers	Fetal Intestine Small	intestine
14	chr14:69077000-69079800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:69077000-69079800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr14:69077200-69079200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:69077200-69079400	Enhancers	Fetal Kidney	kidney
18	chr14:69077200-69079800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr14:69077200-69079800	Enhancers	Gastric	stomach
20	chr14:69077200-69080000	Enhancers	Left Ventricle	heart
21	chr14:69077400-69079800	Enhancers	HSMM	muscle
22	chr14:69077600-69079200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:69077800-69079000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:69077800-69079000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr14:69077800-69079200	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:69077800-69079400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:69077800-69079400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr14:69077800-69079400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:69077800-69079400	Enhancers	Adipose Nuclei	Adipose
30	chr14:69077800-69079400	Enhancers	Right Atrium	heart
31	chr14:69077800-69079600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr14:69077800-69079800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr14:69077800-69079800	Enhancers	Fetal Lung	lung
34	chr14:69077800-69079800	Enhancers	Right Ventricle	heart
35	chr14:69078000-69079400	Enhancers	Fetal Heart	heart
36	chr14:69078000-69079400	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr14:69078000-69079800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:69078000-69080600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr14:69078200-69079000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr14:69078200-69079000	Enhancers	Placenta Amnion	Placenta Amnion
41	chr14:69078200-69079800	Enhancers	Duodenum Mucosa	Duodenum
42	chr14:69078200-69079800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr14:69078200-69079800	Enhancers	HepG2	liver
44	chr14:69078400-69079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:69078400-69079000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr14:69078400-69079000	Enhancers	Brain Anterior Caudate	brain
47	chr14:69078400-69079000	Enhancers	Colonic Mucosa	Colon
48	chr14:69078400-69079000	Enhancers	Fetal Muscle Trunk	muscle
49	chr14:69078400-69079200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:69078400-69079200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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