Variant report

Variant	rs2273485
Chromosome Location	chr14:69095099-69095100
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
2	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
3	chr14:69094921..69095555-chr5:137673535..137674260,2	HCT-116	colon:
4	chr14:69094450..69096526-chr21:43784501..43786843,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP36L1-3	chr14:69095069-69095162	ENSG00000259038.1
2	lnc-ZFP36L1-3	chr14:69095069-69095182	NONHSAT037489

No data

Variant related genes	Relation type
ENSG00000158402	Chromatin interaction
ENSG00000120709	Chromatin interaction
ENSG00000185650	Chromatin interaction
ENSG00000160182	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10873215	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11158754	0.85[ASN][1000 genomes]
rs11158755	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11158756	0.85[ASN][1000 genomes]
rs11629204	0.85[ASN][1000 genomes]
rs12436964	0.88[JPT][hapmap]
rs12893578	0.88[JPT][hapmap]
rs17756585	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17756627	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2180611	0.88[JPT][hapmap]
rs4643253	0.88[JPT][hapmap]
rs4899249	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4899250	1.00[JPT][hapmap]
rs4902615	0.85[CHB][hapmap]
rs4902619	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902620	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902621	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61987113	0.85[ASN][1000 genomes]
rs61987118	0.80[ASN][1000 genomes]
rs68065132	0.87[ASN][1000 genomes]
rs7140554	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs7152224	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7152382	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7152522	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7153037	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7153168	0.84[CHB][hapmap]
rs7154244	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72729553	0.81[ASN][1000 genomes]
rs72729557	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:69087000-69098400	Weak transcription	NHLF	lung
4	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:69091800-69095200	Enhancers	Pancreas	Pancrea
6	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:69092400-69101400	Enhancers	Right Atrium	heart
8	chr14:69092600-69096400	Enhancers	Fetal Heart	heart
9	chr14:69092800-69098800	Enhancers	HepG2	liver
10	chr14:69093000-69104400	Enhancers	Fetal Lung	lung
11	chr14:69093400-69099400	Weak transcription	Lung	lung
12	chr14:69093400-69099400	Weak transcription	Psoas Muscle	Psoas
13	chr14:69093400-69099800	Weak transcription	NHDF-Ad	bronchial
14	chr14:69093600-69095400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:69093600-69096000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:69093600-69097200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:69094200-69095800	Enhancers	Fetal Brain Male	brain
18	chr14:69094200-69096000	Enhancers	Fetal Muscle Trunk	muscle
19	chr14:69094200-69096800	Enhancers	Adipose Nuclei	Adipose
20	chr14:69094200-69099800	Weak transcription	HSMMtube	muscle
21	chr14:69094400-69095200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:69094400-69095400	Active TSS	Brain Cingulate Gyrus	brain
23	chr14:69094400-69095600	Weak transcription	K562	blood
24	chr14:69094400-69096200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr14:69094400-69096800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:69094400-69096800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:69094400-69097000	Weak transcription	Right Ventricle	heart
28	chr14:69094400-69098200	Weak transcription	Ovary	ovary
29	chr14:69094400-69098200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:69094400-69098400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:69094400-69099800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr14:69094600-69095200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
33	chr14:69094600-69095200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr14:69094600-69095200	Active TSS	Brain Hippocampus Middle	brain
35	chr14:69094600-69095400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:69094600-69095400	Active TSS	Brain Inferior Temporal Lobe	brain
37	chr14:69094600-69095600	Active TSS	Rectal Smooth Muscle	rectum
38	chr14:69094600-69095800	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr14:69094600-69097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr14:69094600-69097800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr14:69094800-69095200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr14:69094800-69095200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69094800-69095200	Flanking Active TSS	Liver	Liver
44	chr14:69094800-69095200	Active TSS	Colon Smooth Muscle	Colon
45	chr14:69094800-69095200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr14:69094800-69095200	Enhancers	Small Intestine	intestine
47	chr14:69094800-69095200	Active TSS	HUVEC	blood vessel
48	chr14:69094800-69095200	Flanking Active TSS	NH-A	brain
49	chr14:69094800-69095400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr14:69094800-69095400	Active TSS	Brain Substantia Nigra	brain

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