Variant report

Variant	rs7153037
Chromosome Location	chr14:69098816-69098817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69097412..69100188-chr14:69261786..69263950,2	K562	blood:
2	chr14:69095355..69099854-chr14:69250960..69255583,6	MCF-7	breast:
3	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
4	chr14:69095873..69098018-chr14:69098588..69100398,2	MCF-7	breast:
5	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10873215	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11158754	0.92[ASN][1000 genomes]
rs11158755	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11158756	0.92[ASN][1000 genomes]
rs11629204	0.92[ASN][1000 genomes]
rs12436964	0.86[JPT][hapmap]
rs12893578	0.86[JPT][hapmap]
rs17756585	1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17756627	0.86[ASW][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2180611	0.86[JPT][hapmap]
rs2273485	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4643253	0.86[JPT][hapmap]
rs4899249	1.00[ASW][hapmap];0.93[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899250	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4902619	0.86[ASW][hapmap];0.85[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4902620	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902621	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902626	0.89[ASN][1000 genomes]
rs55767067	0.82[ASN][1000 genomes]
rs61987113	0.92[ASN][1000 genomes]
rs61987118	0.90[ASN][1000 genomes]
rs68065132	0.95[ASN][1000 genomes]
rs7140554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7152224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7152382	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7152522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154244	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72729557	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69092400-69101400	Enhancers	Right Atrium	heart
3	chr14:69093000-69104400	Enhancers	Fetal Lung	lung
4	chr14:69093400-69099400	Weak transcription	Lung	lung
5	chr14:69093400-69099400	Weak transcription	Psoas Muscle	Psoas
6	chr14:69093400-69099800	Weak transcription	NHDF-Ad	bronchial
7	chr14:69094200-69099800	Weak transcription	HSMMtube	muscle
8	chr14:69094400-69099800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:69095000-69100400	Weak transcription	Fetal Kidney	kidney
10	chr14:69095200-69104200	Weak transcription	NH-A	brain
11	chr14:69095200-69104400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:69095400-69099400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:69095400-69099800	Weak transcription	Osteobl	bone
14	chr14:69095600-69099800	Enhancers	Brain Hippocampus Middle	brain
15	chr14:69095600-69100000	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:69095600-69100000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr14:69095600-69100200	Weak transcription	Small Intestine	intestine
18	chr14:69095600-69107400	Enhancers	Fetal Stomach	stomach
19	chr14:69095800-69100000	Enhancers	Brain Anterior Caudate	brain
20	chr14:69095800-69100200	Weak transcription	Brain Germinal Matrix	brain
21	chr14:69095800-69100400	Enhancers	Brain Substantia Nigra	brain
22	chr14:69095800-69101000	Enhancers	Stomach Mucosa	stomach
23	chr14:69095800-69101200	Enhancers	Placenta	Placenta
24	chr14:69095800-69104400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr14:69095800-69107800	Weak transcription	Fetal Brain Female	brain
26	chr14:69096000-69099400	Weak transcription	Primary B cells from cord blood	blood
27	chr14:69096000-69100200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr14:69096000-69100400	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:69096000-69101400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:69096000-69101600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr14:69096200-69099800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr14:69096200-69099800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:69096200-69099800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:69096200-69099800	Weak transcription	HMEC	breast
35	chr14:69096200-69100400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:69096200-69101400	Enhancers	Esophagus	oesophagus
37	chr14:69096200-69104000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:69096400-69099000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:69096400-69099200	Weak transcription	Fetal Heart	heart
40	chr14:69096400-69099800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr14:69096400-69099800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:69096400-69100000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr14:69096400-69100000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:69096400-69100000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:69096400-69100200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr14:69096400-69100400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:69096400-69100600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr14:69096400-69102600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:69096400-69105400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr14:69096400-69105400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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