Variant report

Variant	rs4899249
Chromosome Location	chr14:69101200-69101201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69099148..69101967-chr14:69103316..69106070,4	MCF-7	breast:
2	chr14:69059806..69062420-chr14:69100843..69102617,2	MCF-7	breast:
3	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
4	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10873215	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11158754	0.96[ASN][1000 genomes]
rs11158755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11158756	0.96[ASN][1000 genomes]
rs11629204	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12436964	0.88[JPT][hapmap]
rs12893578	0.90[CHD][hapmap];0.88[JPT][hapmap]
rs17756585	1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17756627	0.86[ASW][hapmap];0.82[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2180611	0.90[CHD][hapmap];0.88[JPT][hapmap]
rs2273485	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4643253	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs4899250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4902619	0.86[ASW][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4902620	0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902621	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902626	0.90[ASN][1000 genomes]
rs55767067	0.84[ASN][1000 genomes]
rs61987113	0.96[ASN][1000 genomes]
rs61987118	0.91[ASN][1000 genomes]
rs68065132	0.99[ASN][1000 genomes]
rs7140554	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7152224	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7152382	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7152522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153037	1.00[ASW][hapmap];0.93[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154244	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729557	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69092400-69101400	Enhancers	Right Atrium	heart
3	chr14:69093000-69104400	Enhancers	Fetal Lung	lung
4	chr14:69095200-69104200	Weak transcription	NH-A	brain
5	chr14:69095200-69104400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:69095600-69107400	Enhancers	Fetal Stomach	stomach
7	chr14:69095800-69101200	Enhancers	Placenta	Placenta
8	chr14:69095800-69104400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:69095800-69107800	Weak transcription	Fetal Brain Female	brain
10	chr14:69096000-69101400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:69096000-69101600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:69096200-69101400	Enhancers	Esophagus	oesophagus
13	chr14:69096200-69104000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr14:69096400-69102600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:69096400-69105400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:69096400-69105400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:69096800-69101200	Enhancers	Colon Smooth Muscle	Colon
18	chr14:69096800-69105000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:69097000-69101400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:69097000-69101600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:69097000-69101600	Enhancers	Left Ventricle	heart
22	chr14:69097200-69104400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:69098000-69102000	Enhancers	Fetal Muscle Trunk	muscle
24	chr14:69098200-69101400	Enhancers	Right Ventricle	heart
25	chr14:69098400-69101600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:69098600-69104600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:69098800-69104200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:69098800-69105200	Weak transcription	Pancreas	Pancrea
29	chr14:69099000-69101200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:69099200-69101200	Enhancers	Fetal Heart	heart
31	chr14:69099400-69101200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr14:69099400-69101200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:69099400-69101400	Enhancers	Lung	lung
34	chr14:69099400-69102000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr14:69099600-69102000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr14:69099800-69101200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr14:69099800-69101200	Enhancers	Fetal Thymus	thymus
38	chr14:69099800-69101400	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr14:69099800-69101400	Enhancers	Spleen	Spleen
40	chr14:69099800-69101600	Enhancers	HSMM	muscle
41	chr14:69099800-69101600	Enhancers	HSMMtube	muscle
42	chr14:69100000-69101200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr14:69100000-69101400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr14:69100200-69101200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69100200-69101200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:69100200-69101400	Enhancers	Gastric	stomach
47	chr14:69100200-69101600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr14:69100400-69101200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr14:69100400-69101200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:69100400-69101200	Flanking Active TSS	Brain Anterior Caudate	brain

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