Variant report

Variant	rs17835493
Chromosome Location	chr14:79119551-79119552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79117364..79120098-chr14:79128016..79129818,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10483910	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10483911	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1558954	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17094080	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107963	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17107972	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17107982	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107998	0.87[EUR][1000 genomes]
rs17108027	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17757034	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs17835469	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60339939	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60501605	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61314717	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976090	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976091	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976094	0.95[AMR][1000 genomes]
rs61976095	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976097	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61976098	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61976099	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs61976100	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976105	0.90[AMR][1000 genomes]
rs61976106	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976107	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976109	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61976112	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61976113	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61976114	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61976115	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61976117	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976118	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976119	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976134	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976135	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976136	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976137	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976139	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976140	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61976142	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61976143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61977061	0.80[EUR][1000 genomes]
rs61977072	0.80[EUR][1000 genomes]
rs61992204	0.80[EUR][1000 genomes]
rs72683546	0.81[EUR][1000 genomes]
rs72683554	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72683556	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72683559	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72683565	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72683567	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72683573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79108200-79123600	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79111400-79123200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:79119000-79120400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:79119200-79120000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:79119200-79120200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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