Variant report

Variant	rs17107972
Chromosome Location	chr14:79100591-79100592
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10483908	1.00[CEU][hapmap]
rs10483909	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10483910	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10483911	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1558954	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17094080	1.00[CEU][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17107930	1.00[CEU][hapmap]
rs17107940	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17107945	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17107950	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17107955	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17107963	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17107982	1.00[CEU][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17107998	0.97[EUR][1000 genomes]
rs17757034	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17835469	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17835493	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55853427	0.80[EUR][1000 genomes]
rs57609667	0.87[EUR][1000 genomes]
rs59429125	0.87[EUR][1000 genomes]
rs60339939	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60501605	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61314717	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976090	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976091	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976094	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61976095	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976097	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976098	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976099	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976100	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976101	0.87[EUR][1000 genomes]
rs61976102	0.87[EUR][1000 genomes]
rs61976103	0.87[EUR][1000 genomes]
rs61976104	0.87[EUR][1000 genomes]
rs61976105	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976106	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976107	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976109	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61976112	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976113	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976114	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976115	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61976117	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976120	0.83[EUR][1000 genomes]
rs61976134	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976136	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976137	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976139	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976140	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61976142	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61976143	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61976144	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61976145	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6574456	1.00[CEU][hapmap]
rs72683546	0.90[EUR][1000 genomes]
rs72683554	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72683556	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72683559	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72683565	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72683567	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72683573	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8019422	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79098800-79102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:79099000-79102200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr14:79099800-79100600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:79099800-79100600	Enhancers	Brain Germinal Matrix	brain
5	chr14:79099800-79100800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:79099800-79100800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:79099800-79101000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:79100000-79100600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:79100000-79100600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:79100000-79100600	Enhancers	Brain Anterior Caudate	brain
11	chr14:79100000-79100800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:79100000-79100800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr14:79100200-79100600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr14:79100400-79100600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:79100400-79100600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:79100400-79100800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:79100400-79100800	Enhancers	Brain Cingulate Gyrus	brain

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