Variant report

Variant	rs17107955
Chromosome Location	chr14:79092147-79092148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79086501..79089213-chr14:79090551..79093027,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10483908	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10483909	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483910	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10483911	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1558954	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17094080	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17107930	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17107940	1.00[CEU][hapmap];0.97[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107945	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107950	1.00[CEU][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107963	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17107972	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17107982	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17107998	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17757034	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17835469	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs55853427	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57416351	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57609667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59429125	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60339939	0.90[EUR][1000 genomes]
rs60501605	0.97[EUR][1000 genomes]
rs61314717	0.97[EUR][1000 genomes]
rs61393149	0.88[EUR][1000 genomes]
rs61976090	0.97[EUR][1000 genomes]
rs61976091	0.97[EUR][1000 genomes]
rs61976092	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61976094	0.95[EUR][1000 genomes]
rs61976095	0.97[EUR][1000 genomes]
rs61976097	0.93[EUR][1000 genomes]
rs61976098	0.93[EUR][1000 genomes]
rs61976099	0.90[EUR][1000 genomes]
rs61976100	0.97[EUR][1000 genomes]
rs61976101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976102	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976105	0.93[EUR][1000 genomes]
rs61976106	0.97[EUR][1000 genomes]
rs61976107	0.97[EUR][1000 genomes]
rs61976109	0.97[EUR][1000 genomes]
rs61976112	0.93[EUR][1000 genomes]
rs61976113	0.93[EUR][1000 genomes]
rs61976114	0.93[EUR][1000 genomes]
rs61976115	0.93[EUR][1000 genomes]
rs61976117	0.90[EUR][1000 genomes]
rs61976118	0.90[EUR][1000 genomes]
rs61976119	0.90[EUR][1000 genomes]
rs61976120	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61976134	0.90[EUR][1000 genomes]
rs61976135	0.90[EUR][1000 genomes]
rs61976136	0.90[EUR][1000 genomes]
rs61976137	0.90[EUR][1000 genomes]
rs61976139	0.90[EUR][1000 genomes]
rs61976140	0.85[EUR][1000 genomes]
rs61976142	0.90[EUR][1000 genomes]
rs6574456	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72683546	0.97[EUR][1000 genomes]
rs72683554	0.97[EUR][1000 genomes]
rs72683556	0.97[EUR][1000 genomes]
rs72683559	0.97[EUR][1000 genomes]
rs72683565	0.86[EUR][1000 genomes]
rs72683567	0.90[EUR][1000 genomes]
rs8017659	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8019422	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79083000-79093600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:79087600-79093200	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79091000-79093200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:79091800-79092400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links