Variant report

Variant	rs55853427
Chromosome Location	chr14:79098966-79098967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10483908	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10483909	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10483910	0.83[EUR][1000 genomes]
rs10483911	0.83[EUR][1000 genomes]
rs12587427	0.93[ASN][1000 genomes]
rs1558954	0.83[EUR][1000 genomes]
rs17094080	0.83[EUR][1000 genomes]
rs17107907	0.93[ASN][1000 genomes]
rs17107912	0.93[ASN][1000 genomes]
rs17107930	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17107940	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17107945	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17107950	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17107955	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17107963	0.83[EUR][1000 genomes]
rs17107972	0.80[EUR][1000 genomes]
rs17107978	0.97[ASN][1000 genomes]
rs17107982	0.83[EUR][1000 genomes]
rs17107986	0.97[ASN][1000 genomes]
rs17107993	0.96[ASN][1000 genomes]
rs17107998	0.83[EUR][1000 genomes]
rs17108011	0.97[ASN][1000 genomes]
rs17108021	0.93[ASN][1000 genomes]
rs17108027	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17757034	0.82[EUR][1000 genomes]
rs17835469	0.83[EUR][1000 genomes]
rs2287495	0.96[ASN][1000 genomes]
rs57416351	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57609667	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58271165	0.93[ASN][1000 genomes]
rs59429125	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59887424	0.97[ASN][1000 genomes]
rs60339939	0.83[EUR][1000 genomes]
rs60501605	0.83[EUR][1000 genomes]
rs60568650	0.94[ASN][1000 genomes]
rs61314717	0.83[EUR][1000 genomes]
rs61393149	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61976090	0.83[EUR][1000 genomes]
rs61976091	0.83[EUR][1000 genomes]
rs61976092	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61976094	0.82[EUR][1000 genomes]
rs61976095	0.83[EUR][1000 genomes]
rs61976097	0.80[EUR][1000 genomes]
rs61976098	0.80[EUR][1000 genomes]
rs61976099	0.80[EUR][1000 genomes]
rs61976100	0.83[EUR][1000 genomes]
rs61976101	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61976102	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61976103	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61976104	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61976105	0.80[EUR][1000 genomes]
rs61976106	0.83[EUR][1000 genomes]
rs61976107	0.83[EUR][1000 genomes]
rs61976109	0.83[EUR][1000 genomes]
rs61976112	0.86[EUR][1000 genomes]
rs61976113	0.86[EUR][1000 genomes]
rs61976114	0.86[EUR][1000 genomes]
rs61976115	0.86[EUR][1000 genomes]
rs61976117	0.83[EUR][1000 genomes]
rs61976118	0.83[EUR][1000 genomes]
rs61976119	0.83[EUR][1000 genomes]
rs61976120	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61976134	0.83[EUR][1000 genomes]
rs61976135	0.83[EUR][1000 genomes]
rs61976136	0.83[EUR][1000 genomes]
rs61976137	0.83[EUR][1000 genomes]
rs61976139	0.83[EUR][1000 genomes]
rs61976142	0.83[EUR][1000 genomes]
rs6574456	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6574459	0.98[ASN][1000 genomes]
rs7142533	0.94[ASN][1000 genomes]
rs7153070	0.94[ASN][1000 genomes]
rs72683546	0.83[EUR][1000 genomes]
rs72683554	0.83[EUR][1000 genomes]
rs72683556	0.83[EUR][1000 genomes]
rs72683559	0.83[EUR][1000 genomes]
rs72683567	0.83[EUR][1000 genomes]
rs74064325	0.91[ASN][1000 genomes]
rs8017659	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8019422	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9646166	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79094000-79099800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79094000-79100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:79097400-79099000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:79098800-79102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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