Variant report

Variant	rs6574459
Chromosome Location	chr14:79098443-79098444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10133574	1.00[EUR][1000 genomes]
rs10483908	0.92[ASN][1000 genomes]
rs12587427	0.93[ASN][1000 genomes]
rs17107907	0.93[ASN][1000 genomes]
rs17107909	1.00[EUR][1000 genomes]
rs17107912	0.93[ASN][1000 genomes]
rs17107930	0.94[ASN][1000 genomes]
rs17107978	0.97[ASN][1000 genomes]
rs17107986	0.97[ASN][1000 genomes]
rs17107993	0.96[ASN][1000 genomes]
rs17108011	0.97[ASN][1000 genomes]
rs17108021	0.93[ASN][1000 genomes]
rs17108027	0.93[ASN][1000 genomes]
rs2287495	0.96[ASN][1000 genomes]
rs55853427	0.98[ASN][1000 genomes]
rs56970537	1.00[EUR][1000 genomes]
rs57222734	1.00[EUR][1000 genomes]
rs57416351	0.96[ASN][1000 genomes]
rs58031431	1.00[EUR][1000 genomes]
rs58133297	1.00[EUR][1000 genomes]
rs58271165	0.93[ASN][1000 genomes]
rs59887424	0.97[ASN][1000 genomes]
rs59894315	1.00[EUR][1000 genomes]
rs60568650	0.94[ASN][1000 genomes]
rs61393149	0.93[ASN][1000 genomes]
rs61507436	1.00[EUR][1000 genomes]
rs61534831	1.00[EUR][1000 genomes]
rs61976092	0.96[ASN][1000 genomes]
rs61976120	0.97[ASN][1000 genomes]
rs6574456	0.93[ASN][1000 genomes]
rs7142533	0.94[ASN][1000 genomes]
rs7153070	0.94[ASN][1000 genomes]
rs74064161	1.00[EUR][1000 genomes]
rs74064167	1.00[EUR][1000 genomes]
rs74064319	1.00[EUR][1000 genomes]
rs74064320	1.00[EUR][1000 genomes]
rs74064325	0.91[ASN][1000 genomes]
rs8009535	1.00[EUR][1000 genomes]
rs8017659	0.94[ASN][1000 genomes]
rs8019422	0.96[ASN][1000 genomes]
rs9646166	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79094000-79099800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79094000-79100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:79097400-79098800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:79097400-79099000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links