Variant report

Variant	rs57416351
Chromosome Location	chr14:79081400-79081401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10483908	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10483909	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12587427	0.98[ASN][1000 genomes]
rs1558954	0.85[EUR][1000 genomes]
rs17107907	0.98[ASN][1000 genomes]
rs17107912	0.98[ASN][1000 genomes]
rs17107930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107940	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17107945	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17107950	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17107955	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17107963	0.85[EUR][1000 genomes]
rs17107978	0.94[ASN][1000 genomes]
rs17107986	0.94[ASN][1000 genomes]
rs17107993	0.93[ASN][1000 genomes]
rs17108011	0.94[ASN][1000 genomes]
rs17108021	0.91[ASN][1000 genomes]
rs17108027	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17757034	0.84[EUR][1000 genomes]
rs2287495	0.93[ASN][1000 genomes]
rs55853427	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57609667	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58271165	0.98[ASN][1000 genomes]
rs59429125	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59887424	0.94[ASN][1000 genomes]
rs60501605	0.85[EUR][1000 genomes]
rs60568650	0.99[ASN][1000 genomes]
rs61314717	0.85[EUR][1000 genomes]
rs61393149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61976090	0.85[EUR][1000 genomes]
rs61976091	0.85[EUR][1000 genomes]
rs61976092	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61976094	0.87[EUR][1000 genomes]
rs61976095	0.85[EUR][1000 genomes]
rs61976097	0.82[EUR][1000 genomes]
rs61976098	0.82[EUR][1000 genomes]
rs61976100	0.85[EUR][1000 genomes]
rs61976101	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61976102	0.88[EUR][1000 genomes]
rs61976103	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61976104	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61976105	0.82[EUR][1000 genomes]
rs61976106	0.85[EUR][1000 genomes]
rs61976107	0.85[EUR][1000 genomes]
rs61976109	0.85[EUR][1000 genomes]
rs61976112	0.82[EUR][1000 genomes]
rs61976113	0.82[EUR][1000 genomes]
rs61976114	0.82[EUR][1000 genomes]
rs61976115	0.82[EUR][1000 genomes]
rs61976120	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574456	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574459	0.96[ASN][1000 genomes]
rs7142533	0.99[ASN][1000 genomes]
rs7153070	0.99[ASN][1000 genomes]
rs72683546	0.85[EUR][1000 genomes]
rs72683554	0.85[EUR][1000 genomes]
rs72683556	0.85[EUR][1000 genomes]
rs72683559	0.85[EUR][1000 genomes]
rs74064325	0.96[ASN][1000 genomes]
rs8017659	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8019422	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9646166	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79079400-79082200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:79079400-79082400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:79079400-79083000	Weak transcription	Brain Germinal Matrix	brain
4	chr14:79079600-79084600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:79079600-79084600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:79079600-79084800	Weak transcription	Brain Hippocampus Middle	brain
7	chr14:79079600-79085200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:79079600-79086200	Weak transcription	Brain Substantia Nigra	brain
9	chr14:79080400-79081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:79081200-79081400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr14:79081200-79081400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:79081400-79084600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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