Variant report

Variant	rs58133297
Chromosome Location	chr14:78924216-78924217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10133574	1.00[EUR][1000 genomes]
rs17107909	1.00[EUR][1000 genomes]
rs56970537	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57222734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58031431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59588653	1.00[EUR][1000 genomes]
rs59894315	1.00[EUR][1000 genomes]
rs61507436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61534831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6574459	1.00[EUR][1000 genomes]
rs732176	1.00[EUR][1000 genomes]
rs74064161	1.00[EUR][1000 genomes]
rs74064167	1.00[EUR][1000 genomes]
rs74064319	1.00[EUR][1000 genomes]
rs74064320	1.00[EUR][1000 genomes]
rs8009535	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78907200-78928200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:78924000-78925200	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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