Variant report

Variant	rs8009535
Chromosome Location	chr14:79069423-79069424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10133574	1.00[EUR][1000 genomes]
rs17107909	0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56970537	1.00[EUR][1000 genomes]
rs57222734	1.00[EUR][1000 genomes]
rs58031431	1.00[EUR][1000 genomes]
rs58133297	1.00[EUR][1000 genomes]
rs59894315	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61507436	1.00[EUR][1000 genomes]
rs61534831	1.00[EUR][1000 genomes]
rs6574459	1.00[EUR][1000 genomes]
rs74064161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064167	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064320	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79063400-79071800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:79065000-79071000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:79065000-79077400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:79065400-79071200	Weak transcription	Fetal Brain Male	brain
5	chr14:79068400-79074400	Enhancers	NHDF-Ad	bronchial
6	chr14:79068600-79069600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr14:79069400-79069800	Enhancers	Brain Germinal Matrix	brain
8	chr14:79069400-79071000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:79069400-79071000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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