Variant report

Variant	rs74064161
Chromosome Location	chr14:79099830-79099831
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10133574	1.00[EUR][1000 genomes]
rs17107909	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17107959	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56970537	1.00[EUR][1000 genomes]
rs57222734	1.00[EUR][1000 genomes]
rs58031431	1.00[EUR][1000 genomes]
rs58133297	1.00[EUR][1000 genomes]
rs59429125	0.81[AFR][1000 genomes]
rs59887424	0.94[AFR][1000 genomes]
rs59894315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61507436	1.00[EUR][1000 genomes]
rs61534831	1.00[EUR][1000 genomes]
rs6574459	1.00[EUR][1000 genomes]
rs74064167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064169	0.83[AMR][1000 genomes]
rs74064319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74064320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009535	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34435	chr14:79055398-79111151	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv2757578	chr14:79055398-79140536	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1367	chr14:79067521-79106387	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79094000-79100400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:79098800-79102000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:79099000-79102200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:79099800-79100000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:79099800-79100600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:79099800-79100600	Enhancers	Brain Germinal Matrix	brain
7	chr14:79099800-79100800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:79099800-79100800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:79099800-79101000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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