Variant report

Variant	rs17835937
Chromosome Location	chr7:150033206-150033207
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150018389..150025798-chr7:150030734..150040389,17	MCF-7	breast:
2	chr7:150025919..150029003-chr7:150032964..150036156,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127399	Chromatin interaction
ENSG00000188707	Chromatin interaction
ENSG00000106526	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10262634	0.82[CEU][hapmap]
rs17134508	0.82[CEU][hapmap]
rs17134518	0.82[CEU][hapmap]
rs17173608	0.84[EUR][1000 genomes]
rs17835738	1.00[CEU][hapmap]
rs1983443	1.00[AFR][1000 genomes]
rs6968928	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv508490	chr7:150006068-150051241	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
11	nsv516052	chr7:150020295-150034184	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv518774	chr7:150020295-150036664	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
14	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
15	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150021400-150037000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:150021800-150033600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:150021800-150037200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:150022000-150036400	Weak transcription	Fetal Kidney	kidney
5	chr7:150022200-150037200	Weak transcription	Small Intestine	intestine
6	chr7:150022400-150035600	Weak transcription	Fetal Heart	heart
7	chr7:150022400-150037400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:150022600-150036800	Strong transcription	Fetal Brain Female	brain
9	chr7:150022800-150033800	Weak transcription	Right Ventricle	heart
10	chr7:150025200-150035200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:150025200-150037600	Strong transcription	Dnd41	blood
12	chr7:150025800-150036000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:150025800-150037000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:150026000-150035600	Weak transcription	Fetal Brain Male	brain
15	chr7:150026400-150035200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:150026400-150036800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:150027400-150035400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr7:150027600-150035200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:150027800-150035800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:150028000-150036600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:150028200-150033800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:150028200-150034200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:150028200-150037000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr7:150028400-150036400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr7:150028400-150037200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr7:150028600-150033600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr7:150028800-150033600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr7:150028800-150036200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:150029000-150033600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:150029000-150034400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:150029000-150036200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr7:150029000-150036200	Weak transcription	GM12878-XiMat	blood
33	chr7:150029200-150036800	Weak transcription	Primary B cells from cord blood	blood
34	chr7:150029200-150037000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:150030200-150036000	Weak transcription	HepG2	liver
36	chr7:150030800-150033600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr7:150031000-150034000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr7:150031000-150034200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:150031000-150036600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:150031400-150033600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:150031400-150033600	Weak transcription	Esophagus	oesophagus
42	chr7:150031400-150033600	Enhancers	Pancreas	Pancrea
43	chr7:150031400-150033800	Weak transcription	Thymus	Thymus
44	chr7:150031400-150034000	Weak transcription	Gastric	stomach
45	chr7:150031400-150034400	Enhancers	Liver	Liver
46	chr7:150031400-150034800	Weak transcription	Hela-S3	cervix
47	chr7:150031400-150037400	Weak transcription	K562	blood
48	chr7:150031600-150033600	Enhancers	Fetal Lung	lung
49	chr7:150031600-150034000	Genic enhancers	Fetal Stomach	stomach
50	chr7:150031800-150034000	Enhancers	Placenta	Placenta

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