Variant report

Variant	rs6968928
Chromosome Location	chr7:149991351-149991352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10226780	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10226892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10248343	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10257486	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10259249	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10262634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10263422	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10263553	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10268956	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10274049	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10282601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11977560	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17134467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17134508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17134518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17835937	0.82[CEU][hapmap]
rs2286443	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2429332	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28445261	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34623713	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35524345	0.80[ASN][1000 genomes]
rs36038850	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3757427	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4015666	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4015671	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57746954	0.87[EUR][1000 genomes]
rs67267434	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6952790	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6953201	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6953703	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6954041	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6968789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889435	chr7:149585379-150013393	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv889452	chr7:149838371-150003208	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv970966	chr7:149961366-150002640	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149976400-149993200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:149978800-150000000	Weak transcription	Pancreas	Pancrea
3	chr7:149983000-149995600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:149983400-149996600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:149984200-150012400	Weak transcription	Liver	Liver
6	chr7:149984200-150019400	Weak transcription	Colonic Mucosa	Colon
7	chr7:149985400-150002600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:149987800-149991400	Weak transcription	K562	blood
9	chr7:149990800-149991600	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr7:149990800-149992400	Strong transcription	Fetal Intestine Small	intestine

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