Variant report

Variant	rs4015666
Chromosome Location	chr7:149975180-149975181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10226780	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10234866	0.85[ASN][1000 genomes]
rs10248343	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10257486	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10259744	0.86[ASN][1000 genomes]
rs10259791	0.86[ASN][1000 genomes]
rs10259795	0.86[ASN][1000 genomes]
rs10262634	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10263422	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10263553	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10274049	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10275006	0.85[ASN][1000 genomes]
rs10282601	0.87[ASN][1000 genomes]
rs11977560	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134467	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1976875	0.81[ASN][1000 genomes]
rs2286443	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286450	0.84[ASN][1000 genomes]
rs2429332	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2462085	0.91[AFR][1000 genomes]
rs2530943	0.83[ASN][1000 genomes]
rs28445261	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28617773	0.80[ASN][1000 genomes]
rs28758896	0.88[ASN][1000 genomes]
rs34623713	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35524345	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36038850	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3757427	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4015671	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57746954	0.87[EUR][1000 genomes]
rs6952790	0.80[AMR][1000 genomes]
rs6953703	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6954041	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6968789	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6968928	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73470314	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889435	chr7:149585379-150013393	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv889452	chr7:149838371-150003208	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv970966	chr7:149961366-150002640	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149953600-149983600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:149959200-149980800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:149959200-149986200	Weak transcription	Lung	lung
4	chr7:149961600-149978200	Weak transcription	Pancreas	Pancrea
5	chr7:149962000-149983600	Weak transcription	Liver	Liver
6	chr7:149974200-149989000	Weak transcription	Esophagus	oesophagus
7	chr7:149974400-149976600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:149975000-149975200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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