Variant report

Variant	rs178377
Chromosome Location	chr14:80178026-80178027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10483933	1.00[YRI][hapmap]
rs17109739	1.00[ASW][hapmap]
rs17109760	1.00[YRI][hapmap]
rs17109772	1.00[YRI][hapmap]
rs17109775	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs178376	0.84[CHB][hapmap];0.84[CHD][hapmap]
rs178378	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs178383	0.90[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs178386	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[YRI][hapmap]
rs7142484	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs178377	BATF	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80171400-80232800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:80176000-80178200	Weak transcription	NHEK	skin
3	chr14:80176000-80178400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:80176200-80178400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:80177600-80178800	Weak transcription	Brain Germinal Matrix	brain
6	chr14:80178000-80178200	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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