Variant report

Variant	rs17109775
Chromosome Location	chr14:80166430-80166431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1030127	0.82[TSI][hapmap]
rs10483933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs17109739	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17109747	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17109764	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17109772	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109778	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs178377	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs178383	1.00[YRI][hapmap]
rs178386	1.00[ASW][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2160920	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993165	0.89[EUR][1000 genomes]
rs61993166	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995221	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995222	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995223	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995224	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995225	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80160600-80170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:80161600-80175800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:80165200-80166600	Enhancers	Rectal Smooth Muscle	rectum
4	chr14:80166200-80166600	Enhancers	Fetal Kidney	kidney
5	chr14:80166400-80170400	Weak transcription	Colon Smooth Muscle	Colon

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