Variant report

Variant	rs61993165
Chromosome Location	chr14:80166647-80166648
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10146886	0.85[ASN][1000 genomes]
rs1030127	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10483931	0.85[ASN][1000 genomes]
rs10483933	0.85[EUR][1000 genomes]
rs17109739	0.81[EUR][1000 genomes]
rs17109747	0.81[EUR][1000 genomes]
rs17109754	0.85[ASN][1000 genomes]
rs17109775	0.89[EUR][1000 genomes]
rs61993166	0.85[EUR][1000 genomes]
rs61995223	0.81[EUR][1000 genomes]
rs61995225	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80160600-80170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:80161600-80175800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:80166400-80170400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:80166600-80168000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:80166600-80171200	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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