Variant report

Variant	rs17849092
Chromosome Location	chr10:89725005-89725006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89724975..89728613-chr10:89729224..89733070,3	K562	blood:
2	chr10:89621748..89623902-chr10:89723296..89725562,2	MCF-7	breast:
3	chr10:89724830..89727506-chr10:89728128..89730724,2	K562	blood:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35917308	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
2	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:89684000-89725600	Weak transcription	Gastric	stomach
5	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
6	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
7	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
12	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
14	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr10:89711200-89726000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:89711200-89727000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:89712400-89725800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:89712600-89731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:89713000-89725400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:89713000-89728800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:89713000-89733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:89713200-89729600	Weak transcription	Fetal Brain Male	brain
23	chr10:89714600-89738600	Weak transcription	NHEK	skin
24	chr10:89715600-89726600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:89715600-89726800	Weak transcription	Esophagus	oesophagus
26	chr10:89715600-89727400	Weak transcription	Pancreas	Pancrea
27	chr10:89715600-89728000	Weak transcription	Small Intestine	intestine
28	chr10:89717000-89727800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:89717200-89726600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:89717400-89726600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr10:89717600-89725800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:89717600-89727000	Strong transcription	Placenta	Placenta
33	chr10:89718000-89726600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:89718000-89727000	Strong transcription	Dnd41	blood
35	chr10:89718400-89728600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:89719000-89726000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:89719000-89726400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:89719600-89726200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:89719600-89726200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:89721000-89726600	Strong transcription	Fetal Thymus	thymus
41	chr10:89721400-89725400	Weak transcription	Brain Angular Gyrus	brain
42	chr10:89721400-89727000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:89721600-89726200	Weak transcription	HUVEC	blood vessel
44	chr10:89721600-89731800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr10:89721800-89735800	Weak transcription	A549	lung
46	chr10:89722000-89726000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:89722000-89727000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:89722000-89736000	Weak transcription	NHLF	lung
49	chr10:89722600-89725600	Strong transcription	Primary T cells from cord blood	blood
50	chr10:89723400-89728800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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