Variant report

Variant	rs1784919
Chromosome Location	chr11:121439665-121439666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11218342	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218343	1.00[CEU][hapmap]
rs11820853	0.81[EUR][1000 genomes]
rs12272618	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1790211	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1792124	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2276412	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2298814	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3781835	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3781838	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6589885	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7131432	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs720099	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939826	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7946599	1.00[CEU][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
7	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:121424800-121441800	Weak transcription	Fetal Brain Male	brain
11	chr11:121425000-121442600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:121425400-121448000	Weak transcription	Stomach Mucosa	stomach
14	chr11:121427200-121442800	Weak transcription	Pancreas	Pancrea
15	chr11:121428200-121441800	Weak transcription	Esophagus	oesophagus
16	chr11:121428200-121451400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:121430000-121439800	Strong transcription	Dnd41	blood
18	chr11:121430800-121443000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:121430800-121446200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:121431000-121442400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:121431000-121466400	Weak transcription	Ovary	ovary
22	chr11:121432800-121450000	Weak transcription	Aorta	Aorta
23	chr11:121434400-121451200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:121434600-121453200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:121434800-121451800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:121435200-121446200	Weak transcription	Fetal Kidney	kidney
27	chr11:121435200-121464800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:121435400-121442200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:121436200-121439800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr11:121436200-121442200	Strong transcription	Primary hematopoietic stem cells	blood
31	chr11:121436200-121450400	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:121436600-121439800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:121437200-121440000	Strong transcription	Fetal Intestine Small	intestine
34	chr11:121437200-121440200	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:121437400-121439800	Strong transcription	Brain Germinal Matrix	brain
36	chr11:121437600-121439800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:121437600-121449600	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:121437800-121442000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:121437800-121442800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:121437800-121443000	Weak transcription	Lung	lung
41	chr11:121437800-121443200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:121437800-121443400	Weak transcription	Fetal Stomach	stomach
43	chr11:121437800-121445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:121437800-121446600	Weak transcription	Right Atrium	heart
45	chr11:121437800-121447800	Weak transcription	Gastric	stomach
46	chr11:121437800-121449600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:121437800-121450000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr11:121437800-121453600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:121438000-121448200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr11:121438000-121449000	Strong transcription	Primary neutrophils fromperipheralblood	blood

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