Variant report

Variant	rs7131432
Chromosome Location	chr11:121426870-121426871
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:121426846-121427407	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
SORL1	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11218342	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11218343	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap]
rs12272618	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs1784919	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1790211	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1792124	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2276412	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs2298814	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781835	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3781838	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6589885	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs720099	1.00[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7939826	1.00[CEU][hapmap]
rs7946599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3334676	chr11:121425342-121428840	Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
6	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:121404600-121437200	Weak transcription	Lung	lung
8	chr11:121405600-121437400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:121411800-121433600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:121412800-121435200	Weak transcription	Small Intestine	intestine
12	chr11:121413600-121429400	Weak transcription	Left Ventricle	heart
13	chr11:121414000-121433600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:121414000-121452400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:121416200-121429200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:121416400-121427400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr11:121416400-121433600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr11:121416400-121451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:121416600-121427200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
21	chr11:121417000-121427600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:121417000-121452400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:121417600-121433400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:121417600-121452400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr11:121417800-121427400	Weak transcription	Aorta	Aorta
26	chr11:121417800-121434000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:121417800-121439000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr11:121418000-121451800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:121418600-121427400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr11:121419200-121427200	Weak transcription	Right Atrium	heart
31	chr11:121420600-121432600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:121420600-121433200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr11:121420600-121433400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:121420600-121433600	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:121421000-121433000	Strong transcription	Primary B cells from cord blood	blood
36	chr11:121421400-121429400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:121421600-121429000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:121422400-121437600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:121422600-121427000	Strong transcription	GM12878-XiMat	blood
40	chr11:121422800-121428400	Strong transcription	Spleen	Spleen
41	chr11:121422800-121437200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:121423000-121432200	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr11:121423200-121427200	Weak transcription	Fetal Brain Female	brain
44	chr11:121423200-121433200	Strong transcription	Fetal Thymus	thymus
45	chr11:121423400-121430800	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr11:121423400-121431000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:121423400-121431600	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr11:121423400-121432800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:121423400-121432800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:121423400-121434000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links