Variant report

Variant	rs17849480
Chromosome Location	chr11:66260191-66260192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66243721..66249369-chr11:66258892..66263387,7	MCF-7	breast:
2	chr11:66245983..66252638-chr11:66253022..66262739,17	MCF-7	breast:
3	chr11:66260133..66262484-chr11:66276298..66279178,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256349	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000255517	Chromatin interaction
ENSG00000174483	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11227491	1.00[AMR][1000 genomes]
rs17850564	1.00[AMR][1000 genomes]
rs55955243	1.00[AMR][1000 genomes]
rs56146874	1.00[AMR][1000 genomes]
rs56177555	1.00[AMR][1000 genomes]
rs56244360	1.00[AMR][1000 genomes]
rs56291132	1.00[AMR][1000 genomes]
rs56380786	1.00[AMR][1000 genomes]
rs56790408	1.00[AMR][1000 genomes]
rs57113976	1.00[AMR][1000 genomes]
rs57412357	1.00[AMR][1000 genomes]
rs58447882	1.00[AMR][1000 genomes]
rs58527779	1.00[AMR][1000 genomes]
rs58883837	1.00[AMR][1000 genomes]
rs59057733	1.00[AMR][1000 genomes]
rs59213528	1.00[AMR][1000 genomes]
rs59792175	1.00[AMR][1000 genomes]
rs60315012	1.00[AMR][1000 genomes]
rs61675228	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
5	nsv468601	chr11:66234023-66296114	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv555224	chr11:66234023-66296114	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66248600-66260200	Weak transcription	HUVEC	blood vessel
2	chr11:66248600-66260200	Weak transcription	NH-A	brain
3	chr11:66248600-66260600	Weak transcription	Psoas Muscle	Psoas
4	chr11:66248600-66260800	Weak transcription	Right Atrium	heart
5	chr11:66248600-66261600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:66248600-66263200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:66248600-66263200	Weak transcription	Small Intestine	intestine
8	chr11:66248600-66277600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:66248600-66277600	Weak transcription	Fetal Brain Male	brain
10	chr11:66248600-66277600	Weak transcription	Fetal Lung	lung
11	chr11:66248600-66278000	Weak transcription	NHDF-Ad	bronchial
12	chr11:66248800-66261200	Weak transcription	Stomach Mucosa	stomach
13	chr11:66248800-66277600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:66248800-66277600	Weak transcription	K562	blood
15	chr11:66249600-66265200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:66249600-66265400	Strong transcription	Lung	lung
17	chr11:66249600-66266800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:66249600-66268200	Strong transcription	Thymus	Thymus
19	chr11:66249600-66268400	Strong transcription	Adipose Nuclei	Adipose
20	chr11:66249800-66260400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr11:66249800-66265200	Strong transcription	Gastric	stomach
22	chr11:66249800-66265200	Strong transcription	NHEK	skin
23	chr11:66249800-66267000	Strong transcription	Spleen	Spleen
24	chr11:66249800-66268800	Strong transcription	Fetal Thymus	thymus
25	chr11:66249800-66268800	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:66249800-66273200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:66250000-66268400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:66250200-66261200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:66250200-66266600	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:66250200-66266600	Strong transcription	Dnd41	blood
31	chr11:66250200-66268400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:66250200-66268400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:66250400-66268200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr11:66250600-66268800	Strong transcription	Liver	Liver
35	chr11:66250800-66268200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:66251200-66277600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:66251400-66269000	Strong transcription	Fetal Brain Female	brain
38	chr11:66251600-66265400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:66251800-66265200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:66251800-66265400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:66251800-66268400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:66251800-66274600	Strong transcription	Fetal Stomach	stomach
43	chr11:66252000-66260600	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:66252200-66268800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:66252600-66268400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr11:66252800-66265600	Strong transcription	Esophagus	oesophagus
47	chr11:66252800-66268000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:66252800-66268400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:66253000-66267200	Strong transcription	Brain Hippocampus Middle	brain
50	chr11:66253400-66261200	Strong transcription	Osteobl	bone

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