Variant report

Variant	rs17854257
Chromosome Location	chr8:104948947-104948948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12677553	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12678453	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12678653	0.94[ASN][1000 genomes]
rs16870667	1.00[EUR][1000 genomes]
rs16870704	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16870797	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16870817	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16870822	0.94[ASN][1000 genomes]
rs16870826	0.92[ASN][1000 genomes]
rs16870841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17854256	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2023031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4531015	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699003	0.97[ASN][1000 genomes]
rs73699004	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv831415	chr8:104907757-105115320	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104929400-104949600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:104930000-104949400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:104938000-104949800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:104939000-104951400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:104939000-104955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:104939400-104959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:104945800-104949400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:104946200-104949600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:104947800-104949400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:104948200-104950800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:104948200-104965200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:104948400-104951200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:104948600-104950000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:104948600-104953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:104948800-104949000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr8:104948800-104952600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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