Variant report

Variant	rs17863259
Chromosome Location	chr7:126899035-126899036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126891985..126894759-chr7:126896631..126899168,2	K562	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10225587	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226889	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246314	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10247396	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10250895	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10254695	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10255618	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269524	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270765	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1111182	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1120908	0.82[AMR][1000 genomes]
rs11563673	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11980484	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706771	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13231840	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1582259	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1582260	0.82[AMR][1000 genomes]
rs1592377	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17862331	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17862334	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17862337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863254	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17864178	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17867808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17869568	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1858774	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2097608	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141414	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4141415	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55647740	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55734624	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948480	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6954027	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7776557	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7792594	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7793635	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7793907	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794751	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7797935	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7800526	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs916597	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3373059	chr7:126897516-126901714	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126894200-126902800	Weak transcription	Right Atrium	heart
2	chr7:126894600-126899600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:126899000-126899400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links