Variant report

Variant	rs1858774
Chromosome Location	chr7:126903201-126903202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10225587	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10226889	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10246314	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10247396	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254695	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255618	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10269524	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10270765	0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs10487473	0.94[GIH][hapmap]
rs1111182	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980484	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12706771	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs13231840	0.80[CEU][hapmap]
rs13246388	0.88[GIH][hapmap]
rs1592377	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs17862334	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862337	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17863254	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs17863259	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17864178	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867808	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17869568	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097608	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4141415	0.81[GIH][hapmap];0.82[EUR][1000 genomes]
rs55647740	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55734624	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6948480	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs6954027	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7777222	1.00[GIH][hapmap]
rs7792594	0.80[CEU][hapmap]
rs7793907	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7794751	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797935	0.80[CEU][hapmap]
rs916597	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs950373	0.88[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv464712	chr7:126881029-126908258	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv608380	chr7:126881029-126908258	Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126899600-126904600	Weak transcription	Gastric	stomach
2	chr7:126903200-126903400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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