Variant report

Variant	rs17863777
Chromosome Location	chr2:234589097-234589098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17862850	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17862858	1.00[CEU][hapmap]
rs17863755	1.00[CEU][hapmap]
rs17863772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17863783	1.00[CEU][hapmap]
rs17863786	1.00[CEU][hapmap];1.00[MKK][hapmap]
rs17864687	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17868309	1.00[CEU][hapmap]
rs17868315	1.00[CEU][hapmap]
rs17868316	0.89[EUR][1000 genomes]
rs17868319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17868321	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17868327	1.00[CEU][hapmap]
rs28899472	1.00[YRI][hapmap]
rs28900379	1.00[YRI][hapmap]
rs28948068	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs28948385	1.00[CEU][hapmap]
rs28969701	1.00[CEU][hapmap]
rs7569014	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1010936	chr2:234549011-234640221	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv3340677	chr2:234580879-234591324	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234559800-234592800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:234588000-234589800	Enhancers	A549	lung
3	chr2:234588000-234593000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:234588600-234597000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:234589000-234590800	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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