Variant report

Variant	rs17865103
Chromosome Location	chr7:127015647-127015648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr7:127015540-127016018	HUVEC	blood vessel:	n/a	chr7:127015893-127015903
2	GATA3	chr7:127015565-127016118	SK-N-SH	brain:	n/a	chr7:127015893-127015903

No.	Distal block	Cell Line	Cell type
1	chr7:127011403..127015656-chr7:127030018..127033626,5	MCF-7	breast:
2	chr7:127013823..127015745-chr7:127047033..127049146,2	K562	blood:
3	chr7:127014796..127019134-chr7:127031317..127035078,8	MCF-7	breast:

Variant related genes	Relation type
ZNF800	TF binding region
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17864930	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865100	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866185	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866395	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866916	1.00[YRI][hapmap]
rs17869706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959255	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959473	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7798749	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
5	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
6	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
7	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:126994000-127019800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:126995400-127022600	Strong transcription	Dnd41	blood
10	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:126999200-127018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
17	chr7:127000200-127019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
21	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
22	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
24	chr7:127001600-127031400	Weak transcription	Gastric	stomach
25	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
27	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
28	chr7:127004200-127015800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:127004600-127017800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:127006800-127017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:127007000-127018200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr7:127007200-127017600	Strong transcription	Placenta	Placenta
33	chr7:127007600-127017800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:127007800-127017800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:127008800-127020000	Strong transcription	K562	blood
36	chr7:127009000-127016600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:127009000-127017600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:127009200-127017600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:127009600-127019800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:127011000-127016600	Strong transcription	GM12878-XiMat	blood
42	chr7:127011200-127016600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr7:127011200-127016800	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr7:127011400-127017400	Strong transcription	Liver	Liver
45	chr7:127011400-127017800	Strong transcription	Hela-S3	cervix
46	chr7:127011600-127015800	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr7:127011600-127018200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr7:127011800-127023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:127012600-127017400	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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