Variant report

Variant	rs17865443
Chromosome Location	chr7:127036445-127036446
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:57)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:57 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:127036320-127036470	HCM	heart:	n/a	n/a
2	CTCF	chr7:127036320-127036470	WI-38	lung:	n/a	n/a
3	POLR2A	chr7:127036303-127036712	HL-60	blood:	n/a	n/a
4	CTCF	chr7:127036300-127036450	AG04449	skin:	n/a	n/a
5	CTCF	chr7:127036300-127036450	HL-60	blood:	n/a	n/a
6	CTCF	chr7:127036300-127036450	GM12869	blood:	n/a	n/a
7	ELF1	chr7:127036249-127036695	K562	blood:	n/a	n/a
8	EBF1	chr7:127036205-127036564	GM12878	blood:	n/a	n/a
9	CTCF	chr7:127036320-127036470	GM12875	blood:	n/a	n/a
10	CTCF	chr7:127036380-127036530	HMF	breast:	n/a	n/a
11	CTCF	chr7:127036300-127036450	HCPEpiC	choroid plexus:	n/a	n/a
12	PML	chr7:127036174-127036719	GM12878	blood:	n/a	n/a
13	CTCF	chr7:127036300-127036450	GM12867	blood:	n/a	n/a
14	CEBPB	chr7:127036165-127036822	GM12878	blood:	n/a	n/a
15	CTCF	chr7:127036320-127036470	A549	lung:	n/a	n/a
16	CBX3	chr7:127036158-127036645	K562	blood:	n/a	n/a
17	CEBPB	chr7:127036350-127036550	Hela-S3	cervix:	n/a	n/a
18	JUND	chr7:127036385-127036583	HepG2	liver:	n/a	n/a
19	NFYB	chr7:127036374-127036549	GM12878	blood:	n/a	n/a
20	USF1	chr7:127036140-127036557	K562	blood:	n/a	chr7:127036376-127036387
21	CTCF	chr7:127036300-127036450	GM12874	blood:	n/a	n/a
22	ZNF143	chr7:127036228-127036517	K562	blood:	n/a	n/a
23	CTCF	chr7:127036300-127036450	RPTEC	kidney:	n/a	n/a
24	CTCF	chr7:127036340-127036490	MCF-7	breast:	n/a	n/a
25	USF1	chr7:127036233-127036487	H1-hESC	embryonic stem cell:	n/a	chr7:127036376-127036387
26	RUNX3	chr7:127036251-127036607	GM12878	blood:	n/a	n/a
27	MAX	chr7:127036222-127036481	K562	blood:	n/a	n/a
28	CTCF	chr7:127036300-127036450	HEEpiC	esophagus:	n/a	n/a
29	CTCF	chr7:127036300-127036450	GM12865	blood:	n/a	n/a
30	CTCF	chr7:127036300-127036450	AG09309	skin:	n/a	n/a
31	MAX	chr7:127036325-127036461	H1-hESC	embryonic stem cell:	n/a	n/a
32	MAX	chr7:127036180-127036588	K562	blood:	n/a	n/a
33	CTCF	chr7:127036300-127036450	HEK293	kidney:	n/a	n/a
34	MYC	chr7:127036420-127036615	MCF10A-Er-Src	breast:	n/a	n/a
35	PAX5	chr7:127036257-127036476	GM12878	blood:	n/a	n/a
36	NFATC1	chr7:127036234-127036721	GM12878	blood:	n/a	n/a
37	SPI1	chr7:127036286-127036842	HL-60	blood:	n/a	n/a
38	USF2	chr7:127036320-127036482	GM12878	blood:	n/a	n/a
39	CTCF	chr7:127036300-127036450	K562	blood:	n/a	n/a
40	CTCF	chr7:127036200-127036527	K562	blood:	n/a	n/a
41	CTCF	chr7:127036340-127036490	GM12868	blood:	n/a	n/a
42	CTCF	chr7:127036300-127036450	NHDF-neo	bronchial:	n/a	n/a
43	CTCF	chr7:127036300-127036450	MCF-7	breast:	n/a	n/a
44	USF1	chr7:127036283-127036508	H1-hESC	embryonic stem cell:	n/a	chr7:127036376-127036387
45	CTCF	chr7:127036320-127036470	HEK293	kidney:	n/a	n/a
46	CTCF	chr7:127036320-127036470	GM12865	blood:	n/a	n/a
47	ATF2	chr7:127036229-127036695	GM12878	blood:	n/a	n/a
48	FOXM1	chr7:127036137-127036691	GM12878	blood:	n/a	n/a
49	CTCF	chr7:127036300-127036450	GM12871	blood:	n/a	n/a
50	CTCF	chr7:127036300-127036450	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:126988173..126990960-chr7:127036333..127038260,2	K562	blood:
2	chr7:126991047..126993006-chr7:127034690..127037263,2	K562	blood:
3	chr7:127035320..127037674-chr7:127043618..127045228,2	K562	blood:
4	chr7:127031701..127034064-chr7:127034316..127037068,3	MCF-7	breast:
5	chr7:127030420..127033990-chr7:127034934..127040808,8	MCF-7	breast:
6	chr7:127036421..127038438-chr7:127044881..127046557,2	MCF-7	breast:
7	chr7:126987437..126990960-chr7:127034932..127038867,5	K562	blood:

No data

Variant related genes	Relation type
ZNF800	TF binding region
ENSG00000224138	Chromatin interaction
ENSG00000048405	Chromatin interaction

rs_ID	r²[population]
rs17865099	1.00[YRI][hapmap]
rs17865444	1.00[YRI][hapmap]
rs17865906	1.00[YRI][hapmap]
rs17866311	1.00[YRI][hapmap]
rs17866319	1.00[YRI][hapmap]
rs17866327	1.00[YRI][hapmap]
rs17867075	1.00[YRI][hapmap]
rs17869287	1.00[YRI][hapmap]
rs17869381	1.00[YRI][hapmap]
rs17869662	1.00[YRI][hapmap]
rs17869726	1.00[YRI][hapmap]
rs1894727	1.00[YRI][hapmap]

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127036000-127036800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:127036200-127036600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:127036200-127036600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:127036200-127036600	Enhancers	GM12878-XiMat	blood
5	chr7:127036200-127036600	Enhancers	K562	blood
6	chr7:127036200-127036800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:127036200-127036800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:127036400-127036600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr7:127036400-127036600	Enhancers	Sigmoid Colon	Sigmoid Colon

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