Variant report
| Variant | rs17865906 |
|---|---|
| Chromosome Location | chr7:127039871-127039872 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:127039588..127041678-chr7:127043379..127046046,3 | K562 | blood: | |
| 2 | chr7:127030420..127033990-chr7:127034934..127040808,8 | MCF-7 | breast: | |
| 3 | chr7:127031453..127035052-chr7:127037163..127040431,4 | MCF-7 | breast: | |
| 4 | chr7:127038677..127040829-chr7:127049998..127052890,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs17865099 | 1.00[YRI][hapmap] |
| rs17865443 | 1.00[YRI][hapmap] |
| rs17865444 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17865999 | 1.00[AFR][1000 genomes] |
| rs17866311 | 1.00[YRI][hapmap] |
| rs17866319 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17866327 | 1.00[YRI][hapmap] |
| rs17867075 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17869287 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17869381 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs17869662 | 1.00[YRI][hapmap] |
| rs17869726 | 1.00[YRI][hapmap] |
| rs1894727 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs951991 | 1.00[AFR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
