Variant report

Variant	rs17865448
Chromosome Location	chr7:126792706-126792707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17864958	1.00[YRI][hapmap]
rs17865089	1.00[YRI][hapmap]
rs17865140	1.00[YRI][hapmap]
rs17865234	1.00[YRI][hapmap]
rs17865502	1.00[YRI][hapmap]
rs17865863	1.00[YRI][hapmap]
rs17866040	1.00[YRI][hapmap]
rs17866143	1.00[YRI][hapmap]
rs17866394	1.00[YRI][hapmap]
rs17866429	1.00[YRI][hapmap]
rs17866776	1.00[YRI][hapmap]
rs17869246	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027369	chr7:126772111-126798871	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126792200-126792800	Enhancers	Liver	Liver
2	chr7:126792400-126793200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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