Variant report

Variant	rs17865502
Chromosome Location	chr7:126830318-126830319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17864958	1.00[YRI][hapmap]
rs17865089	1.00[YRI][hapmap]
rs17865140	1.00[YRI][hapmap]
rs17865234	1.00[YRI][hapmap]
rs17865448	1.00[YRI][hapmap]
rs17865863	1.00[YRI][hapmap]
rs17866040	1.00[YRI][hapmap]
rs17866143	1.00[YRI][hapmap]
rs17866394	1.00[YRI][hapmap]
rs17866429	1.00[YRI][hapmap]
rs17866776	1.00[YRI][hapmap]
rs17869246	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126828200-126830400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:126828600-126830400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr7:126828800-126830400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:126828800-126830600	Enhancers	Brain Angular Gyrus	brain
5	chr7:126829000-126830400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:126829000-126830400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:126829200-126830400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:126829200-126830400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:126829600-126830400	Enhancers	Brain Substantia Nigra	brain
10	chr7:126830000-126830400	Enhancers	Brain Hippocampus Middle	brain
11	chr7:126830000-126830400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:126830200-126830400	Enhancers	Brain Anterior Caudate	brain
13	chr7:126830200-126830400	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:126830200-126830400	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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