Variant report

Variant	rs17865905
Chromosome Location	chr7:127027256-127027257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126986706..126988243-chr7:127024325..127027268,2	K562	blood:
2	chr7:127007429..127009015-chr7:127025280..127028276,2	MCF-7	breast:
3	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
4	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000004059	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10246965	1.00[AMR][1000 genomes]
rs10252007	1.00[AMR][1000 genomes]
rs10260068	1.00[AMR][1000 genomes]
rs10279972	1.00[AMR][1000 genomes]
rs10487478	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11563297	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11563458	1.00[AMR][1000 genomes]
rs11563461	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11563469	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11563471	1.00[AMR][1000 genomes]
rs11563634	1.00[YRI][hapmap]
rs1419417	1.00[AMR][1000 genomes]
rs1557641	1.00[AMR][1000 genomes]
rs17864971	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865209	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865399	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17865903	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs17866001	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17866216	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17866217	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17870051	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2040501	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964017	1.00[AMR][1000 genomes]
rs7796747	1.00[YRI][hapmap]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
4	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
5	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
6	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
12	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
13	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
14	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
15	chr7:127001600-127031400	Weak transcription	Gastric	stomach
16	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
18	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
19	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
22	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:127015000-127027400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:127015000-127027400	Weak transcription	Colon Smooth Muscle	Colon
27	chr7:127015000-127027600	Weak transcription	Left Ventricle	heart
28	chr7:127015000-127027600	Weak transcription	Ovary	ovary
29	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
30	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
32	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
34	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
35	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
37	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:127015000-127031400	Weak transcription	Lung	lung
39	chr7:127015200-127028200	Weak transcription	Fetal Lung	lung
40	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
42	chr7:127020800-127027600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr7:127021000-127027400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:127022200-127031200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:127022600-127030200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:127023000-127030600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr7:127023400-127027400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:127023400-127027800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:127023600-127027400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:127023600-127027400	Weak transcription	Small Intestine	intestine

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