Variant report

Variant	rs7796747
Chromosome Location	chr7:127017001-127017002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127015806..127018202-chr7:127031905..127033944,2	MCF-7	breast:
2	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:
3	chr7:127009044..127010892-chr7:127015747..127017535,2	MCF-7	breast:
4	chr7:127014796..127019134-chr7:127031317..127035078,8	MCF-7	breast:
5	chr13:47369560..47372383-chr7:127016119..127018399,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139684	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10487478	0.87[YRI][hapmap]
rs10487480	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10954149	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11563297	0.87[YRI][hapmap]
rs11563346	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11563460	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11563461	1.00[YRI][hapmap]
rs11563467	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11563624	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11563628	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11563629	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11563630	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11563634	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11563641	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11563650	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11563652	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12672573	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12706780	0.93[EUR][1000 genomes]
rs12706783	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12706784	0.95[EUR][1000 genomes]
rs12706785	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13228039	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13233168	0.87[EUR][1000 genomes]
rs13246300	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1419398	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1419399	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1419414	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17862368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17862369	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17863291	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17863295	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17863297	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17864195	0.91[EUR][1000 genomes]
rs17864971	1.00[YRI][hapmap]
rs17865209	1.00[YRI][hapmap]
rs17865903	0.87[YRI][hapmap]
rs17865905	1.00[YRI][hapmap]
rs17866001	1.00[YRI][hapmap]
rs17866216	1.00[YRI][hapmap]
rs17866217	1.00[YRI][hapmap]
rs17867824	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17867840	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17867842	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17870051	1.00[YRI][hapmap]
rs2040501	1.00[YRI][hapmap]
rs2402860	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs71578227	0.92[EUR][1000 genomes]
rs7781891	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
5	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
6	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
7	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:126994000-127019800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:126995400-127022600	Strong transcription	Dnd41	blood
10	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:126999200-127018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
17	chr7:127000200-127019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
21	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
22	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
24	chr7:127001600-127031400	Weak transcription	Gastric	stomach
25	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
27	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
28	chr7:127004600-127017800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:127006800-127017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr7:127007000-127018200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr7:127007200-127017600	Strong transcription	Placenta	Placenta
32	chr7:127007600-127017800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:127007800-127017800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:127008800-127020000	Strong transcription	K562	blood
35	chr7:127009000-127017600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:127009200-127017600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:127009600-127019800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:127011400-127017400	Strong transcription	Liver	Liver
40	chr7:127011400-127017800	Strong transcription	Hela-S3	cervix
41	chr7:127011600-127018200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:127011800-127023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:127012600-127017400	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:127012800-127020600	Strong transcription	Primary B cells from peripheral blood	blood
46	chr7:127013200-127018200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr7:127013400-127017600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:127013800-127017600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
50	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum

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