Variant report

Variant	rs11563652
Chromosome Location	chr7:126962756-126962757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126085913-126088095..7:126960843-126968648	GM12878	blood:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10487480	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10954149	0.82[ASN][1000 genomes]
rs11563346	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563460	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs11563467	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563624	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs11563628	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs11563629	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs11563630	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs11563634	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11563641	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563648	1.00[ASN][1000 genomes]
rs11563650	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672573	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12706780	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12706783	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12706784	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12706785	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13228039	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs13233168	0.97[ASN][1000 genomes]
rs13246300	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419398	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1419399	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419414	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs17862368	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17862369	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17863291	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17863295	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs17863297	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs17864195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17865345	0.92[ASN][1000 genomes]
rs17867824	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867840	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17867842	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2040500	0.97[ASN][1000 genomes]
rs2402860	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs3944151	1.00[ASN][1000 genomes]
rs4731350	0.97[ASN][1000 genomes]
rs6972420	0.97[ASN][1000 genomes]
rs71578227	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7781891	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7796747	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7805194	0.97[ASN][1000 genomes]
rs7805256	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv967497	chr7:126958676-126966982	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126961600-126963400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr7:126961600-126963600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr7:126961800-126962800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr7:126961800-126963600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:126962000-126963000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr7:126962000-126963200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr7:126962000-126963600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:126962400-126963000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr7:126962600-126962800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:126962600-126963000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr7:126962600-126963200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:126962600-126963400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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