Variant report

Variant	rs17863295
Chromosome Location	chr7:127046243-127046244
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127036421..127038438-chr7:127044881..127046557,2	MCF-7	breast:
2	chr7:127030697..127035065-chr7:127043160..127048470,6	K562	blood:
3	chr7:127031310..127034202-chr7:127044820..127047685,5	MCF-7	breast:
4	chr7:127044593..127047117-chr7:127056262..127057766,2	K562	blood:
5	chr7:127044608..127046451-chr7:127058342..127060584,2	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10487480	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10954149	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563634	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563648	0.97[ASN][1000 genomes]
rs11563650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs11563652	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs12672573	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706780	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706783	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706784	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706785	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13228039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419398	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862368	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17862369	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863291	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864195	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17865345	0.90[ASN][1000 genomes]
rs17867824	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs17867840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17867842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2040500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2269729	0.81[CHB][hapmap]
rs2402860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3944151	0.97[ASN][1000 genomes]
rs4731350	0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs6972420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71578227	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781891	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796747	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7805194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7805256	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127045200-127048800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:127045200-127048800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:127045200-127048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:127045200-127049000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:127045400-127053000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:127045800-127048800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:127045800-127048800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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