Variant report
| Variant | rs17865345 |
|---|---|
| Chromosome Location | chr7:126978382-126978383 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126977128..126979944-chr7:126984146..126986183,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11563460 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11563467 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11563624 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11563628 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11563629 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11563641 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs11563648 | 0.92[ASN][1000 genomes] |
| rs11563650 | 0.92[ASN][1000 genomes] |
| rs11563652 | 0.92[ASN][1000 genomes] |
| rs12706780 | 0.90[ASN][1000 genomes] |
| rs13228039 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs13233168 | 0.90[ASN][1000 genomes] |
| rs13246300 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1419399 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1419414 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs17863295 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs17863297 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs17864195 | 0.92[ASN][1000 genomes] |
| rs17867824 | 0.92[ASN][1000 genomes] |
| rs17867840 | 0.86[JPT][hapmap] |
| rs17867842 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2027954 | 1.00[JPT][hapmap] |
| rs2040500 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs3944151 | 0.92[ASN][1000 genomes] |
| rs4731350 | 0.86[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6972420 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs71578227 | 0.87[ASN][1000 genomes] |
| rs7781891 | 0.90[ASN][1000 genomes] |
| rs7805194 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7805256 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17865345 | ZNF800 | cis | brain | BrainEAC |
| rs17865345 | ZNF800 | cis | cerebellar cortex | BrainEAC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126977000-126978600 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 2 | chr7:126977600-126979400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
