Variant report

Variant	rs11563624
Chromosome Location	chr7:127053246-127053247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:127052734-127055199..7:127225864-127233104	Hela-S3	cervix:
2	chr7:127032613..127034757-chr7:127051825..127053647,2	MCF-7	breast:
3	chr7:127031512..127033226-chr7:127051647..127053860,2	K562	blood:
4	7:126890676-126899918..7:127052734-127055199	H1-hESC	embryonic stem cell:	embryo
5	chr7:127047814..127051155-chr7:127051314..127054818,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10487480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10954149	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563460	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563648	0.97[ASN][1000 genomes]
rs11563650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.97[ASN][1000 genomes]
rs11563652	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs12672573	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706780	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706783	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706784	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706785	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13228039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13246300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419398	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862368	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17862369	1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863291	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864195	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17865345	0.90[ASN][1000 genomes]
rs17867824	1.00[CEU][hapmap];0.97[ASN][1000 genomes]
rs17867840	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17867842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027954	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2040500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2269729	0.81[CHB][hapmap]
rs2402860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3944151	0.97[ASN][1000 genomes]
rs4731350	0.90[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs6972420	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71578227	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781891	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796747	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7805194	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7805256	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11563624	ZNF800	cis	cerebellum	SCAN
rs11563624	ZNF800	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127046600-127058400	Weak transcription	Pancreas	Pancrea
2	chr7:127051400-127054000	Enhancers	Primary B cells from cord blood	blood
3	chr7:127051400-127058600	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:127052400-127053800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:127052400-127055600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:127052800-127053600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr7:127052800-127054200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:127052800-127058000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:127053000-127053400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
10	chr7:127053000-127053800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr7:127053000-127054200	Enhancers	Primary T cells from cord blood	blood
12	chr7:127053000-127054600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr7:127053000-127056000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:127053200-127053400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
15	chr7:127053200-127053600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:127053200-127053600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr7:127053200-127053800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:127053200-127054000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:127053200-127055400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr7:127053200-127055400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:127053200-127056000	Enhancers	Primary hematopoietic stem cells	blood

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