Variant report

Variant	rs17863291
Chromosome Location	chr7:127027552-127027553
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127007429..127009015-chr7:127025280..127028276,2	MCF-7	breast:
2	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
3	chr7:127011822..127013678-chr7:127027337..127029022,2	MCF-7	breast:
4	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:
5	chr7:127018682..127020329-chr7:127027306..127029620,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000004059	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10487480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954149	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563641	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563648	0.82[ASN][1000 genomes]
rs11563650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563652	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12672573	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706780	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706783	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706784	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13233168	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13246300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419398	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419414	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17862368	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862369	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863295	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17864195	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17867824	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17867840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2027954	1.00[CHB][hapmap]
rs2040500	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2269729	0.81[CHB][hapmap]
rs2402860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3944151	0.82[ASN][1000 genomes]
rs4731350	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs6972420	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs71578227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7781891	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7796747	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7805194	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7805256	1.00[CHB][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
4	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
5	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
6	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
11	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
12	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
14	chr7:127001600-127031400	Weak transcription	Gastric	stomach
15	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
17	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
18	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
21	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr7:127015000-127027600	Weak transcription	Left Ventricle	heart
24	chr7:127015000-127027600	Weak transcription	Ovary	ovary
25	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
26	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
28	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
30	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
31	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
33	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr7:127015000-127031400	Weak transcription	Lung	lung
35	chr7:127015200-127028200	Weak transcription	Fetal Lung	lung
36	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
38	chr7:127020800-127027600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr7:127022200-127031200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:127022600-127030200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:127023000-127030600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr7:127023400-127027800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:127023600-127030000	Weak transcription	NH-A	brain
44	chr7:127023600-127030200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:127023600-127031200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr7:127023600-127031200	Weak transcription	Stomach Mucosa	stomach
47	chr7:127023600-127031200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:127023600-127031400	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:127023800-127028200	Weak transcription	Hela-S3	cervix
50	chr7:127023800-127030200	Weak transcription	NHEK	skin

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