Variant report

Variant	rs11563648
Chromosome Location	chr7:126970046-126970047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126963386..126966341-chr7:126969354..126971418,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10487480	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs10954149	0.82[ASN][1000 genomes]
rs11563346	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs11563460	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11563467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11563624	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11563628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11563629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11563630	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs11563634	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[TSI][hapmap];0.80[ASN][1000 genomes]
rs11563641	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.97[ASN][1000 genomes]
rs11563650	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11563652	1.00[ASN][1000 genomes]
rs12672573	0.82[ASN][1000 genomes]
rs12706779	0.86[AFR][1000 genomes]
rs12706780	0.97[ASN][1000 genomes]
rs12706783	0.82[ASN][1000 genomes]
rs12706784	0.82[ASN][1000 genomes]
rs12706785	0.82[ASN][1000 genomes]
rs13228039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13233168	0.97[ASN][1000 genomes]
rs13246300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1361937	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1361938	0.84[ASW][hapmap];0.95[MKK][hapmap];0.90[YRI][hapmap]
rs1361939	0.89[LWK][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs1419395	0.95[YRI][hapmap]
rs1419396	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1419398	0.82[ASN][1000 genomes]
rs1419399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1419414	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17862368	0.82[ASN][1000 genomes]
rs17862369	0.82[ASN][1000 genomes]
rs17863291	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17863295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17863297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17864195	1.00[ASN][1000 genomes]
rs17865345	0.92[ASN][1000 genomes]
rs17867824	1.00[ASN][1000 genomes]
rs17867840	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs17867842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2027954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2040500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2188182	0.81[AFR][1000 genomes]
rs2269729	0.81[CHB][hapmap]
rs2402858	0.90[AFR][1000 genomes]
rs2402860	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs3944151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731350	0.92[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731351	0.83[AFR][1000 genomes]
rs6467122	0.95[YRI][hapmap]
rs6957320	0.84[ASW][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap]
rs6959198	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs6972420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71578227	0.95[ASN][1000 genomes]
rs7781891	0.97[ASN][1000 genomes]
rs7805194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs916601	0.86[AFR][1000 genomes]
rs951808	0.95[YRI][hapmap];0.83[AFR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11563648	ZNF800	cis	parietal	SCAN
rs11563648	ZNF800	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126969400-126971000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr7:126969600-126971000	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr7:126969800-126970800	Active TSS	Rectal Mucosa Donor 29	rectum

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