Variant report

Variant	rs2402858
Chromosome Location	chr7:126969638-126969639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126963386..126966341-chr7:126969354..126971418,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10251884	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10272297	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1029358	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1029359	1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[AMR][1000 genomes]
rs1029360	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs11563648	0.90[AFR][1000 genomes]
rs12706779	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1361937	1.00[CEU][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1361938	0.85[YRI][hapmap]
rs1361939	0.91[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1361941	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1361944	1.00[CEU][hapmap];0.87[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1419395	0.90[YRI][hapmap]
rs1419396	1.00[CEU][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1419397	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1419412	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1419413	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1419415	1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[AMR][1000 genomes]
rs1419422	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1557640	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs1946106	0.83[AMR][1000 genomes]
rs2027954	0.90[YRI][hapmap]
rs2040500	0.90[YRI][hapmap]
rs2188182	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3944151	0.90[AFR][1000 genomes]
rs4548117	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs4731350	0.90[YRI][hapmap]
rs4731351	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6467122	0.90[YRI][hapmap]
rs6957320	0.90[YRI][hapmap]
rs6959198	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6972420	0.90[YRI][hapmap]
rs7779672	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7805194	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs7805256	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs7810990	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs916601	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs951808	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs986585	1.00[CEU][hapmap];0.83[AMR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126969400-126971000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr7:126969600-126971000	Enhancers	Sigmoid Colon	Sigmoid Colon

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