Variant report

Variant	rs1419422
Chromosome Location	chr7:127017908-127017909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127015806..127018202-chr7:127031905..127033944,2	MCF-7	breast:
2	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:
3	chr7:127014796..127019134-chr7:127031317..127035078,8	MCF-7	breast:
4	chr13:47369560..47372383-chr7:127016119..127018399,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139684	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10251884	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10272297	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1029358	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1029359	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1029360	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12706779	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1361937	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1361939	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1361941	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1361944	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1419396	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1419397	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1419412	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1419413	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419415	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1557640	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1946106	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2188182	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2402858	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4548117	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4731351	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6959198	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7779672	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7810990	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs916601	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs951808	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs986585	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
5	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
6	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
7	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:126994000-127019800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:126995400-127022600	Strong transcription	Dnd41	blood
10	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:126999200-127018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
17	chr7:127000200-127019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
21	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
22	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
24	chr7:127001600-127031400	Weak transcription	Gastric	stomach
25	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
27	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
28	chr7:127007000-127018200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr7:127008800-127020000	Strong transcription	K562	blood
30	chr7:127009600-127019800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:127011600-127018200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr7:127011800-127023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:127012800-127020600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr7:127013200-127018200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
38	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:127014600-127022600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:127014600-127027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:127014800-127023400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:127015000-127019000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr7:127015000-127020200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:127015000-127020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:127015000-127022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:127015000-127022600	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:127015000-127023200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:127015000-127023200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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