Variant report

Variant	rs4548117
Chromosome Location	chr7:127025672-127025673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127020763..127022477-chr7:127024716..127027114,2	MCF-7	breast:
2	chr7:126986399..126988206-chr7:127024325..127027237,2	K562	blood:
3	chr7:126986706..126988243-chr7:127024325..127027268,2	K562	blood:
4	chr7:127007429..127009015-chr7:127025280..127028276,2	MCF-7	breast:
5	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
6	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106328	Chromatin interaction
ENSG00000004059	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10251884	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10272297	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1029358	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1029359	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1029360	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12706779	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1361937	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1361939	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1361941	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1361944	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1419396	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419397	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419412	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1419413	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1419415	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1419422	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1557640	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1946106	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2188182	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2402858	0.83[AMR][1000 genomes]
rs4731351	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6959198	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7779672	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7810990	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs916601	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs951808	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs986585	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
4	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
5	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
6	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
13	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
14	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
15	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
16	chr7:127001600-127031400	Weak transcription	Gastric	stomach
17	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
19	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
20	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
23	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:127014600-127027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:127015000-127026600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:127015000-127027400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:127015000-127027400	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:127015000-127027600	Weak transcription	Left Ventricle	heart
31	chr7:127015000-127027600	Weak transcription	Ovary	ovary
32	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
33	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
35	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
37	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
38	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
40	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr7:127015000-127031400	Weak transcription	Lung	lung
42	chr7:127015200-127027200	Weak transcription	Fetal Intestine Large	intestine
43	chr7:127015200-127028200	Weak transcription	Fetal Lung	lung
44	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
46	chr7:127020000-127025800	Strong transcription	HSMM	muscle
47	chr7:127020800-127027600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr7:127021000-127027400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr7:127022200-127031200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:127022400-127026200	Strong transcription	Rectal Mucosa Donor 31	rectum

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