Variant report

Variant	rs1029359
Chromosome Location	chr7:127046153-127046154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127036421..127038438-chr7:127044881..127046557,2	MCF-7	breast:
2	chr7:127030697..127035065-chr7:127043160..127048470,6	K562	blood:
3	chr7:127031310..127034202-chr7:127044820..127047685,5	MCF-7	breast:
4	chr7:127044593..127047117-chr7:127056262..127057766,2	K562	blood:
5	chr7:127044608..127046451-chr7:127058342..127060584,2	K562	blood:
6	chr7:127043924..127046222-chr7:127079225..127082030,2	K562	blood:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10251884	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10272297	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1029358	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1029360	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12706779	0.89[AMR][1000 genomes]
rs1361937	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1361939	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1361941	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1361944	1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1419396	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1419397	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1419412	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1419413	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1419415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1419422	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1557640	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1946106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2188182	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2402858	0.83[AMR][1000 genomes]
rs4548117	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4731351	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6959198	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7779672	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7810990	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs916601	0.89[AMR][1000 genomes]
rs951808	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs986585	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127045200-127048800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:127045200-127048800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:127045200-127048800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:127045200-127049000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:127045400-127053000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:127045800-127048800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:127045800-127048800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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