Variant report

Variant	rs17862368
Chromosome Location	chr7:127017391-127017392
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr7:127017309-127017575	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127015806..127018202-chr7:127031905..127033944,2	MCF-7	breast:
2	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:
3	chr7:127009044..127010892-chr7:127015747..127017535,2	MCF-7	breast:
4	chr7:127014796..127019134-chr7:127031317..127035078,8	MCF-7	breast:
5	chr13:47369560..47372383-chr7:127016119..127018399,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF800	TF binding region
ENSG00000139684	Chromatin interaction
ENSG00000048405	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10487480	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954149	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563346	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563460	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563467	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563624	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563628	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563629	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563630	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563634	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563641	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11563648	0.82[ASN][1000 genomes]
rs11563650	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11563652	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12672573	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706780	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706783	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706784	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706785	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13228039	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13233168	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13246300	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419398	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419399	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419414	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17862369	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863291	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863295	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17863297	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17864195	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17867824	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17867840	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17867842	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2040500	0.84[ASN][1000 genomes]
rs2402860	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3944151	0.82[ASN][1000 genomes]
rs4731350	0.84[ASN][1000 genomes]
rs6972420	0.84[ASN][1000 genomes]
rs71578227	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7781891	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7796747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7805194	0.84[ASN][1000 genomes]
rs7805256	0.84[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
5	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
6	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
7	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:126994000-127019800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:126995400-127022600	Strong transcription	Dnd41	blood
10	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:126999200-127018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
17	chr7:127000200-127019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
21	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
22	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
24	chr7:127001600-127031400	Weak transcription	Gastric	stomach
25	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
27	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
28	chr7:127004600-127017800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:127007000-127018200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:127007200-127017600	Strong transcription	Placenta	Placenta
31	chr7:127007600-127017800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:127007800-127017800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:127008800-127020000	Strong transcription	K562	blood
34	chr7:127009000-127017600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr7:127009200-127017600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:127009600-127019800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:127011400-127017400	Strong transcription	Liver	Liver
39	chr7:127011400-127017800	Strong transcription	Hela-S3	cervix
40	chr7:127011600-127018200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr7:127011800-127023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:127012600-127017400	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:127012800-127020600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr7:127013200-127018200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr7:127013400-127017600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:127013800-127017600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
49	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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