Variant report

Variant	rs17866004
Chromosome Location	chr4:118350793-118350794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10004879	1.00[AMR][1000 genomes]
rs10015961	1.00[AMR][1000 genomes]
rs17865155	1.00[AMR][1000 genomes]
rs17865228	1.00[AMR][1000 genomes]
rs17866869	1.00[AMR][1000 genomes]
rs17866976	1.00[AMR][1000 genomes]
rs17869387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17869771	1.00[AMR][1000 genomes]
rs28513507	1.00[AMR][1000 genomes]
rs28690437	1.00[AMR][1000 genomes]
rs72916254	1.00[AMR][1000 genomes]
rs7666064	1.00[AMR][1000 genomes]
rs7681166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv482430	chr4:118347180-118497181	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118339800-118350800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:118350200-118350800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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